PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012593
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 226aa    MW: 23835.5 Da    PI: 11.8926
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-113433PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-1271115347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l+  +  ++G+g+W++I+r     Rt+ q+ s+ qky
        Sof012593  71 PWTEEEHRLFFAGLDKFGKGDWRSISRNXVISRTPTQVASHAQKY 115
                      8*****************************89************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.91564120IPR017930Myb domain
SuperFamilySSF466892.09E-1666121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-1168114IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1668118IPR006447Myb domain, plants
SMARTSM007179.4E-1168118IPR001005SANT/Myb domain
CDDcd001674.34E-1071116No hitNo description
PfamPF002491.2E-1071115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
XGPDPVPGVA KGRVVXRTAR GFRSRRLRRP KTEEGGGGNG PPRKNGKTAA AGVNAGKSAS  60
KADQNRRKGV PWTEEEHRLF FAGLDKFGKG DWRSISRNXV ISRTPTQVAS HAQKYFIRLN  120
SMNRDRRRSS IHDITSVTAG DVAAAGAPIT GGPAAAGAMP MGPAGMKHHH PAPPMGMYGH  180
APMGHPVAGH MVAPAAVGTP VMFPPGHHSP YVVPVGYPAP PAKMHQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.190110.0leaf| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455466.11e-119hypothetical protein SORBIDRAFT_03g011280
SwissprotQ8S9H74e-37DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLC5XHB01e-119C5XHB0_SORBI; Putative uncharacterized protein Sb03g011280
STRINGSb03g011280.11e-119(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-49MYB family protein